Amirali Aghazadeh

Georgia Tech

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Coda S1209

Tech Square

Atlanta, GA 30308

I am an Assistant Professor in the School of Electrical and Computer Engineering at the Georgia Institute of Technology. I serve as Program Faculty for the Ph.D. programs in Machine Learning, Bioinformatics, and Bioengineering, and am affiliated with the IDEaS, IMS, SRI, and Petit Institute (IBB).

Prior to Georgia Tech, I was a postdoctoral researcher at Stanford and UC Berkeley, and earned my Ph.D. at Rice University. My research group develops mathematical algorithms and theoretical tools for scalable, interpretable, and design-oriented AI systems, with a focus on understanding and engineering biological functions.

Current research directions are:

  • Machine Learning & AI: Generative models, efficient inference, high-dim learning
  • Mechanistic Interpretability: Attribution methods, neural circuit analysis
  • Agentic AI: Hypothesis generation, validation, multi-step reasoning
  • AI for Science: Protein engineering, cryo-EM, chemistry, and astrobiology

I pronounce my first name Ah-meer-ah-lee and my last name Ah-gah-zah-deh.

news

Jun 14, 2026 Excited that two papers from the group have been accepted to the ICML26 Mechanistic Interpretability Workshop!
Apr 30, 2026 ProtoMech has been accepted to ICML! ProtoMech cracks open protein language models to expose the hidden circuits they use and lets you steer them to design better proteins.
Apr 16, 2026 Happy to be named as a Scialog Fellow! Our mission is to develop agents that make sciecne discovery fully automated.
Feb 21, 2026 cryoSENSE has been accepted to CVPR! 🎉 We demonstrate that generative AI can dramatically increase data throughput in cryo-EM acquisition.
Sep 29, 2025 Our LifeTracer work with NASA on discriminating Abiotic and Biotic organics in meteorite and terrestrial samples is now accepted to PNAS Nexus! 🎉

selected publications

  1. markov.png
    On the Error-Correcting Effects of Stochasticity in Discrete Diffusion
    William Yuan, Sungwon Jeong, and Amirali Aghazadeh
    arXiv preprint arXiv:2605.26582, 2026
  2. protomech.png
    Protein Circuit Tracing via Cross-layer Transcoders
    Darin Tsui, Kunal Talreja, Daniel Saeedi, and 1 more author
    International Conference on Machine Learning Research (ICML), 2026
  3. microscope.png
    Thinking microscopes: agentic AI and the future of electron microscopy
    Vida Jamali, Amirali Aghazadeh, and Josh Kacher
    npj Computational Materials, 2026
  4. ddpm.gif
    cryoSENSE: Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors on the Protein Cryo-EM Image Manifold
    Zain Shabeeb, Daniel Saeedi, Darin Tsui, and 2 more authors
    Conference on Computer Vision and Pattern Recognition (CVPR), 2026
  5. SHAPzero.jpg
    SHAP zero Explains Biological Sequence Models with Near-zero Marginal Cost for Future Queries
    Darin Tsui, Aryan Musharaf, Yigit Efe Erginbas, and 2 more authors
    Conference on Neural Information Processing Systems (NeurIPS), 2025