Amirali Aghazadeh

Georgia Tech

prof_pic.jpg

Coda S1209

Tech Square

Atlanta, GA 30308

I am an Assistant Professor in the School of Electrical and Computer Engineering at the Georgia Institute of Technology. I serve as Program Faculty in the Ph.D. programs in Machine Learning, Bioinformatics, and Bioengineering, and am affiliated with IDEaS, IMS, SRI, and the Petit Institute for Bioengineering and Bioscience (IBB).

Prior to joining Georgia Tech, I was a postdoctoral researcher at Stanford and UC Berkeley, and earned my Ph.D. from Rice University. My research lies at the intersection of machine learning, computational biology, information theory, and high-dimensional statistics, with a current focus on developing safe, secure, and interpretable AI for scientific discovery:

  • Fundamentals of ML/AI: Generative and diffusion models in discrete spaces
  • AI Safety and Biosecurity: Mechanistic interpretability and spectral methods
  • Agentic AI: Hypothesis generation, validation, and inter-agent communication
  • AI for Biology and Chemistry: Protein sequence–function modeling, epistasis, cryo-EM imaging, origin-of-life research, and astrobiology

I pronounce my first name Ah-meer-ah-lee and my last name Ah-gah-zah-deh.

news

Jul 10, 2026 I received the Foresight Institute AI for Science & Safety Nodes grant and will participate in its community of researchers advancing AI-enabled science and safety.
Jun 14, 2026 Excited that two papers from the group have been accepted to the ICML26 Mechanistic Interpretability Workshop!
Apr 30, 2026 ProtoMech has been accepted to ICML! ProtoMech cracks open protein language models to expose the hidden circuits they use and lets you steer them to design better proteins.
Apr 16, 2026 Happy to be named as a Scialog Fellow! Our mission is to develop agents that make sciecne discovery fully automated.
Feb 21, 2026 cryoSENSE has been accepted to CVPR! 🎉 We demonstrate that generative AI can dramatically increase data throughput in cryo-EM acquisition.

selected publications

  1. land.jpg
    Protein fitness landscapes are simpler under evolutionary distributions
    Darin Tsui, Kunal Talreja, and Amirali Aghazadeh
    bioRxiv 2026.07.08.737351, 2026
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    Autonomous Multi-Agent Reconstruction of Prebiotic Reaction Networks Reveals Organizational Features of Amino Acid Synthesis
    Daniel Saeedi, Nihit Pockrel, Leijia Gao, and 5 more authors
    ChemRxiv, 2026
  3. markov.png
    On the Error-Correcting Effects of Stochasticity in Discrete Diffusion
    William Yuan, Sungwon Jeong, and Amirali Aghazadeh
    arXiv:2605.26582, 2026
  4. protomech.png
    Protein Circuit Tracing via Cross-layer Transcoders
    Darin Tsui, Kunal Talreja, Daniel Saeedi, and 1 more author
    International Conference on Machine Learning Research (ICML), 2026
  5. microscope.png
    Thinking microscopes: agentic AI and the future of electron microscopy
    Vida Jamali, Amirali Aghazadeh, and Josh Kacher
    npj Computational Materials, 2026
  6. ddpm.gif
    cryoSENSE: Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors on the Protein Cryo-EM Image Manifold
    Zain Shabeeb, Daniel Saeedi, Darin Tsui, and 2 more authors
    Conference on Computer Vision and Pattern Recognition (CVPR), 2026